RegulonDB RegulonDB 10.9: Gene Form
   

pmrR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

proP basS basR pmrR eptA basSp4 basSp4 TSS_4921 TSS_4921 TSS_4920 TSS_4920 TSS_4919 TSS_4919 TSS_4918 TSS_4918 TSS_4917 TSS_4917 TSS_4916 TSS_4916 TSS_4915 TSS_4915 TSS_4914 TSS_4914

Gene      
Name: pmrR    Texpresso search in the literature
Synonym(s): ECK4515, G0-10707, b4703
Genome position(nucleotides): 4332116 --> 4332205 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.22
External database links:  
STRING:
511145.b4703
COLOMBOS: pmrR


Product      
Name: putative bitopic inner membrane protein
Synonym(s): PmrR
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 3.465
Isoelectric point: 9.048
Motif(s):
 
Type Positions Sequence
5 -> 29 VYESLTTVFSVLVVSSFLYIWFATY

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4214
REFSEQ:
YP_004831120
UNIPROT:
G3MTW7


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4914 4330838 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4915 4330987 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4916 4331343 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4917 4331353 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4918 4331355 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4919 4332618 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4920 4332748 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4921 4332753 reverse nd [RS-EPT-CBR] [1]
  promoter basSp4 4333477 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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