RegulonDB RegulonDB 10.8: Gene Form
   

nc8 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

treF gadA ccp nc8 OxyR OxyR FNR Fis TorR GadX GadW Fis GadX GadW Fis GadX GadW GadE-RcsB CRP GadX GadW GadX RcsB Fis GadX FNR TorR RutR ppGpp terminator TSS_4131 TSS_4131 treFp treFp yhjAp yhjAp TSS_4130 TSS_4130 gadAp gadAp TSS_4129 TSS_4129

Gene      
Name: nc8    Texpresso search in the literature
Genome position(nucleotides): 3668941 --> 3669196 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: Nc8
Synonym(s): trans-encoded antisense RNA
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Evidence: [IE] Inferred from experiment
Reference(s): [1] Macvanin M., et al., 2012


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4129 3667155 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4130 3668779 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4131 3670505 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Macvanin M., Edgar R., Cui F., Trostel A., Zhurkin V., Adhya S., 2012, Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli., J Bacteriol 194(22):6046-55

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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