RegulonDB RegulonDB 10.8: Gene Form
   

nc9 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

carA rihC dapB nc9 ArgR ArgR Fis PepA Fis PurR Fis PepA RutR IHF ArgP ArgP carBp carBp carAp2 carAp2 carAp1 carAp1 dapBp1 dapBp1 TSS_75 TSS_75 dapBp2 dapBp2

Gene      
Name: nc9    Texpresso search in the literature
Genome position(nucleotides): 28509 --> 28620 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat


Product      
Name: Nc9
Synonym(s): trans-encoded antisense RNA
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Evidence: [IE] Inferred from experiment
Reference(s): [1] Macvanin M., et al., 2012


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_75 28293 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Macvanin M., Edgar R., Cui F., Trostel A., Zhurkin V., Adhya S., 2012, Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli., J Bacteriol 194(22):6046-55

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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