RegulonDB RegulonDB 10.10: Gene Form
   

yrdE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhdH accB yrdE yrdF b3254 FadR accBp2 accBp2 accBp accBp TSS_3590 TSS_3590 TSS_3589 TSS_3589

Gene      
Name: yrdE    Texpresso search in the literature
Synonym(s): ECK4442, G0-16661, b4646
Type: Pseudo Gene
Genome position(nucleotides): 3404638 --> 3405031 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.16
External database links:  
ASAP:
 ABE-0285243
COLOMBOS: yrdE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3589 3403932 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3590 3404746 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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