RegulonDB RegulonDB 10.9: Gene Form
   

ysdD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dnaA rpmH ysdD ArgP ArgP DnaA DnaA DnaA DnaA DnaA ArgP ppGpp ppGpp TSS_4276 TSS_4276 TSS_4275 TSS_4275 TSS_4274 TSS_4274 TSS_4273 TSS_4273 TSS_4272 (cluster) TSS_4272 (cluster) rpmHp2 rpmHp2 rpmHp1 rpmHp1 rpmHp3 rpmHp3 dnaAp1 dnaAp1 dnaAp2 dnaAp2 TSS_4270 TSS_4270 dnaNp1 dnaNp1 TSS_4269 TSS_4269 dnaNp2 dnaNp2 dnaNp3 dnaNp3 TSS_4268 TSS_4268 TSS_4267 TSS_4267 dnaNp4 dnaNp4

Gene      
Name: ysdD    Texpresso search in the literature
Synonym(s): ECK4614, G0-16751, b4757
Genome position(nucleotides): 3884026 --> 3884106 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
40.74


Product      
Name: protein YsdD
Synonym(s): YsdD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 3.112
Isoelectric point: 11.55
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4435
UNIPROT:
P0DPP8


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4267 3882351 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4268 3882359 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4269 3882731 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4270 3883878 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4272 (cluster) 3884238 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_4273 3884308 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4274 3884312 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4275 3884319 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4276 3884346 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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