RegulonDB RegulonDB 10.10: Gene Form

ynfT gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

ydfJ ydfK ynfT anti-anti-terminator anti-terminator terminator ydfKp5 ydfKp5 TSS_1860 TSS_1860 TSS_1859 TSS_1859 TSS_1858 TSS_1858 TSS_1857 TSS_1857 TSS_1856 TSS_1856 TSS_1855 TSS_1855 TSS_1854 TSS_1854 ynfTp ynfTp TSS_1853 TSS_1853 TSS_1852 TSS_1852

Name: ynfT    Texpresso search in the literature
Synonym(s): ECK4605, G0-16742, b4748
Genome position(nucleotides): 1632890 --> 1633003 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  

Name: Qin prophage; protein YnfT
Synonym(s): YnfT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 4.013
Isoelectric point: 7.541
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  

Name: ynfT-ydfK         
Operon arrangement:
Transcription unit        Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1852 1632714 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1853 1632716 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1854 1632860 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1855 1632862 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1856 1632864 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1857 1632866 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1858 1632868 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1859 1632871 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1860 1632878 forward nd [RS-EPT-CBR] [1]
  promoter ydfKp5 1632985 forward nd [ICWHO] [2]


 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78