RegulonDB RegulonDB 11.1: Gene Form
   

yncO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsE ydcC yncI ydcD yncO terminator pptAp6 pptAp6 pptAp7 pptAp7 TSS_1825 TSS_1825

Gene      
Name: yncO    Texpresso search in the literature
Synonym(s): ECK4602, G0-16739, b4745
Genome position(nucleotides): 1530319 <-- 1530504
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 31.72


Product      
Name: protein YncO
Synonym(s): YncO
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 7.383
Isoelectric point: 8.097
Motif(s):
 
Type Positions Sequence Comment
18 -> 38 HVFLYVFYIFLFLVLFIMTIY UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0DPO5
ECOCYC:
 MONOMER0-4422
UNIPROT:
 P0DPO5


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1825 1530150 forward nd [RS-EPT-CBR] [1]
  promoter pptAp7 1532858 forward nd [COMP-AINF] [2]
  promoter pptAp6 1532867 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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