RegulonDB

Gene
Name:	sdhX
Synonym(s):	ECK4621, G0-17009, b4764, rybD
Genome position(nucleotides):	765050 --> 765150 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.51
Reference(s):	[1] De Mets F., et al., 2019 [2] Miyakoshi M., et al., 2019

Product

Name:

SdhX

Synonym(s):

ECK4621, G0-17009, RybD, b4764, rybD, small regulatory RNA SdhX

Type:

small RNA

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)
	molecular_function	GO:0005515 - protein binding GO:0048027 - mRNA 5'-UTR binding
	biological_process	GO:0040033 - negative regulation of translation, ncRNA-mediated

Note(s):

Note(s): ...[more].

Evidence:

[IMP] Inferred from mutant phenotype

Reference(s):

External database links:

ECOCYC:

Operon

Name:

Operon arrangement:

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_858	764187	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_859	764211	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_860	764423	forward	nd	[RS-EPT-CBR]	[4]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] De Mets F., Van Melderen L., Gottesman S., 2019, Regulation of acetate metabolism and coordination with the TCA cycle via a processed small RNA., Proc Natl Acad Sci U S A 116(3):1043-1052
[2] Miyakoshi M., Matera G., Maki K., Sone Y., Vogel J., 2019, Functional expansion of a TCA cycle operon mRNA by a 3' end-derived small RNA., Nucleic Acids Res 47(4):2075-2088
[3] Sridhar J., Rafi ZA., 2007, Identification of novel genomic islands associated with small RNAs., In Silico Biol 7(6):601-11
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.