RegulonDB RegulonDB 11.2: Gene Form
   

ychT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

adhE ychE ychT Lrp Fis Fis Lrp Fis Lrp Cra FNR NarL NarL terminator anti-terminator anti-anti-terminator ychEp8 ychEp8 adhEp1 adhEp1 adhEp adhEp adhEp2 adhEp2 TSS_1621 TSS_1621 TSS_1620 (cluster) TSS_1620 (cluster) TSS_1619 (cluster) TSS_1619 (cluster) TSS_1618 TSS_1618 TSS_1617 TSS_1617 TSS_1616 TSS_1616 TSS_1615 TSS_1615 TSS_1614 (cluster) TSS_1614 (cluster) TSS_1613 TSS_1613 TSS_1612 TSS_1612 TSS_1611 TSS_1611 TSS_1610 TSS_1610 TSS_1609 (cluster) TSS_1609 (cluster) TSS_1608 TSS_1608 TSS_1607 TSS_1607 TSS_1606 TSS_1606 TSS_1605 TSS_1605 TSS_1604 TSS_1604 TSS_1603 TSS_1603 TSS_1602 TSS_1602 TSS_1601 (cluster) TSS_1601 (cluster) TSS_1600 TSS_1600 TSS_1599 (cluster) TSS_1599 (cluster) TSS_1598 TSS_1598 TSS_1597 TSS_1597 TSS_1596 TSS_1596 TSS_1595 TSS_1595 TSS_1594 TSS_1594 TSS_1593 TSS_1593 TSS_1592 TSS_1592 TSS_1591 TSS_1591 TSS_1590 TSS_1590 TSS_1589 TSS_1589 TSS_1588 TSS_1588 TSS_1587 TSS_1587 TSS_1586 TSS_1586 TSS_1585 TSS_1585 TSS_1584 TSS_1584 TSS_1583 TSS_1583 TSS_1582 TSS_1582 TSS_1581 TSS_1581 TSS_1580 TSS_1580 TSS_1579 TSS_1579 TSS_1578 TSS_1578 TSS_1577 TSS_1577

Gene      
Name: ychT    Texpresso search in the literature
Synonym(s): ECK4627, G0-17017, b4771
Genome position(nucleotides): 1298514 --> 1298567
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 40.74


Product      
Name: protein YchT
Synonym(s): YchT
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 1.882
Isoelectric point: 10.452
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0DSE9
ECOCYC:
 MONOMER0-4483
UNIPROT:
 P0DSE9


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1577 1295543 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1578 1295679 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1579 1295919 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1580 1296310 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1581 1296316 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1582 1296554 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1583 1296583 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1584 1296586 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1585 1296589 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1586 1296611 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1587 1296616 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1588 1296672 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1589 1296674 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1590 1296756 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1591 1296775 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1592 1296797 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1593 1296870 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1594 1296892 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1595 1296896 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1596 1297024 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1597 1297170 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1598 1297212 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1599 (cluster) 1297288 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1600 1297462 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1601 (cluster) 1297466 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1602 1297601 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1603 1297609 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1604 1297628 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1605 1297669 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1606 1297682 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1607 1297691 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1608 1297717 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1609 (cluster) 1297803 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1610 1297806 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1611 1297812 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1612 1297840 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1613 1297873 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1614 (cluster) 1297877 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1615 1298092 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1616 1298104 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1617 1298113 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1618 1298138 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1619 (cluster) 1298145 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1620 (cluster) 1298151 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1621 1298217 reverse nd [RS-EPT-CBR] [1]
  promoter ychEp8 1298452 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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