RegulonDB RegulonDB 11.1: Gene Form
   

rbsZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rbsC rbsK rbsB rbsZ RybB terminator anti-terminator TSS_4366 (cluster) TSS_4366 (cluster) TSS_4365 TSS_4365 TSS_4364 (cluster) TSS_4364 (cluster) TSS_4363 (cluster) TSS_4363 (cluster) TSS_4362 TSS_4362 TSS_4361 TSS_4361 TSS_4360 TSS_4360

Gene      
Name: rbsZ    Texpresso search in the literature
Synonym(s): ECK4661, G0-17077, b4804
Genome position(nucleotides): 3937045 --> 3937278
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 46.58


Product      
Name: small regulatory RNA RbsZ
Synonym(s): RbsZ
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
molecular_function GO:0061980 - regulatory RNA binding
GO:0005515 - protein binding
GO:0003727 - single-stranded RNA binding
GO:0003729 - mRNA binding
biological_process GO:1904572 - negative regulation of mRNA binding
Note(s): Note(s): ...[more].
Evidence: [EXP-IMP] Inferred from mutant phenotype
Reference(s): [1] Melamed S., et al., 2020
External database links:  
ECOCYC:
 RNA0-406


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4360 3935432 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4361 3936137 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4362 3936145 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4363 (cluster) 3936163 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4364 (cluster) 3936177 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4365 3936260 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4366 (cluster) 3937237 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Melamed S., Adams PP., Zhang A., Zhang H., Storz G., 2020, RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles., Mol Cell 77(2):411-425.e7

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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