RegulonDB RegulonDB 11.2: Gene Form
   

tpr gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ychS rttR tpr tyrV Cis-reg Cis-reg Cis-reg tprp1 tprp1

Gene      
Name: tpr    Texpresso search in the literature
Synonym(s): ECK1224, EG11016, b1229
Genome position(nucleotides): 1287087 <-- 1287176
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 64.44
External database links:  
ASAP:
 ABE-0004131
CGSC:
 87
ECHOBASE:
 EB1009
ECOLIHUB:
 tpr
OU-MICROARRAY:
 b1229
STRING:
 511145.b1229
COLOMBOS: tpr


Product      
Name: protamine-like protein
Synonym(s): Tpr
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 3.447
Isoelectric point: 12.398
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.7 - nucleoproteins, basic proteins
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Bosl M., et al., 1991
[2] Ow MC., et al., 2002
[3] Rossi J., et al., 1981
[4] Yamamoto N., et al., 2009
External database links:  
ALPHAFOLD:
 P02338
ECOCYC:
 EG11016-MONOMER
ECOLIWIKI:
 b1229
PRIDE:
 P02338
REFSEQ:
 NP_415747
UNIPROT:
 P02338


Operon      
Name: tyrTV-tpr         
Operon arrangement:
Transcription unit        Promoter
tyrTV-tpr
tyrV-tpr


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


RNA cis-regulatory element    
   
Cis-reg RtT RNA
   
   


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tprp1 1287188 reverse nd [COMP-AINF] [5]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Bosl M., Kersten H., 1991, A novel RNA product of the tyrT operon of Escherichia coli., Nucleic Acids Res 19(21):5863-70

 [2] Ow MC., Kushner SR., 2002, Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli., Genes Dev 16(9):1102-15

 [3] Rossi J., Egan J., Hudson L., Landy A., 1981, The tyrT locus: termination and processing of a complex transcript., Cell 26(3 Pt 1):305-14

 [4] Yamamoto N., Nakahigashi K., Nakamichi T., Yoshino M., Takai Y., Touda Y., Furubayashi A., Kinjyo S., Dose H., Hasegawa M., Datsenko KA., Nakayashiki T., Tomita M., Wanner BL., Mori H., 2009, Update on the Keio collection of Escherichia coli single-gene deletion mutants., Mol Syst Biol 5:335

 [5] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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