RegulonDB RegulonDB 11.1: Gene Form
   

ydiE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

selO aroH ydiE ydiEp5 ydiEp5 TSS_1995 TSS_1995

Gene      
Name: ydiE    Texpresso search in the literature
Synonym(s): ECK1703, EG12391, b1705
Genome position(nucleotides): 1789613 --> 1789804
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.52
External database links:  
ASAP:
 ABE-0005692
ECHOBASE:
 EB2292
ECOLIHUB:
 ydiE
OU-MICROARRAY:
 b1705
STRING:
 511145.b1705
COLOMBOS: ydiE


Product      
Name: PF10636 family protein YdiE
Synonym(s): YdiE
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 7.117
Isoelectric point: 10.379
Motif(s):
 
Type Positions Sequence Comment
1 -> 32 MRYTDSRKLTPETDANHKTASPQPIRRISSQT UniProt: Disordered; Sequence Annotation Type: region of interest.
15 -> 30 ANHKTASPQPIRRISS UniProt: Polar residues; Sequence Annotation Type: compositionally biased region.
27 -> 63 RISSQTLLGPDGKLIIDHDGQEYLLRKTQAGKLLLTK

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0042803 - protein homodimerization activity
External database links:  
ALPHAFOLD:
 P0ACX9
DISPROT:
 DP00989
ECOCYC:
 EG12391-MONOMER
ECOLIWIKI:
 b1705
INTERPRO:
 IPR019600
PDB:
 4YNX
PFAM:
 PF10636
PRIDE:
 P0ACX9
REFSEQ:
 NP_416220
SMR:
 P0ACX9
UNIPROT:
 P0ACX9


Operon      
Name: ydiE         
Operon arrangement:
Transcription unit        Promoter
ydiE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1995 1789271 forward nd [RS-EPT-CBR] [1]
  promoter ydiEp5 1789603 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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