RegulonDB RegulonDB 11.1: Gene Form
   

dgcE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgcE alkA udk

Gene      
Name: dgcE    Texpresso search in the literature
Synonym(s): ECK2061, EG12396, b2067, yegE
Genome position(nucleotides): 2143266 --> 2146583
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.35
External database links:  
ASAP:
 ABE-0006845
ECHOBASE:
 EB2297
ECOLIHUB:
 yegE
OU-MICROARRAY:
 b2067
STRING:
 511145.b2067
COLOMBOS: dgcE


Product      
Name: putative diguanylate cyclase DgcE
Synonym(s): DgcE, YegE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 123.887
Isoelectric point: 6.198
Motif(s):
 
Type Positions Sequence Comment
9 -> 29 LIALPHPLLHLVSLGLVSFIF UniProt: Helical.
19 -> 294 LVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAER
38 -> 58 QFGTQLAPLWFPTSIMMVAFY UniProt: Helical.
64 -> 84 MWPGIALSCSLGNIAASILLF UniProt: Helical.
88 -> 108 SLNMTWTTINIVEAVVGAVLL UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.3 - motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc)
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005515 - protein binding
GO:0016740 - transferase activity
GO:0046872 - metal ion binding
GO:0000166 - nucleotide binding
GO:0005525 - GTP binding
GO:0042802 - identical protein binding
GO:0052621 - diguanylate cyclase activity
biological_process GO:1900231 - regulation of single-species biofilm formation on inanimate substrate
External database links:  
ALPHAFOLD:
 P38097
ECOCYC:
 EG12396-MONOMER
ECOLIWIKI:
 b2067
INTERPRO:
 IPR001610
INTERPRO:
 IPR043128
INTERPRO:
 IPR035965
INTERPRO:
 IPR035919
INTERPRO:
 IPR029787
INTERPRO:
 IPR013656
INTERPRO:
 IPR013655
INTERPRO:
 IPR000700
INTERPRO:
 IPR000160
INTERPRO:
 IPR001633
INTERPRO:
 IPR000014
INTERPRO:
 IPR007895
MODBASE:
 P38097
PFAM:
 PF13426
PFAM:
 PF08448
PFAM:
 PF08447
PFAM:
 PF05231
PFAM:
 PF00563
PFAM:
 PF00990
PRIDE:
 P38097
PROSITE:
 PS50113
PROSITE:
 PS50883
PROSITE:
 PS50887
PROSITE:
 PS50112
REFSEQ:
 NP_416571
SMART:
 SM00086
SMART:
 SM00091
SMART:
 SM00267
SMART:
 SM00052
SMR:
 P38097
UNIPROT:
 P38097


Operon      
Name: dgcE         
Operon arrangement:
Transcription unit        Promoter
yegE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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