RegulonDB RegulonDB 11.2: Gene Form
   

tyrT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

purU tyrT tyrV Fis Fis Fis ppGpp Cis-reg TSS_1557 TSS_1557 TSS_1556 TSS_1556 tyrTp tyrTp

Gene      
Name: tyrT    Texpresso search in the literature
Synonym(s): ECK1226, EG30106, Su-3, Su-4, b1231, su(c), suIII, supC, supFsupO, tyrTalpha
Genome position(nucleotides): 1287538 <-- 1287622
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 58.82
External database links:  
ASAP:
 ABE-0004136
CGSC:
 53
ECHOBASE:
 EB4269
ECOLIHUB:
 tyrT
OU-MICROARRAY:
 b1231
COLOMBOS: tyrT


Product      
Name: tRNA-Tyr(GUA)
Synonym(s): tRNAtyrT
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Abelson J., et al., 1969
[2] Addepalli B., et al., 2016
[3] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 tyrT-tRNA
ECOLIWIKI:
 b1231


Operon      
Name: tyrTV-tpr         
Operon arrangement:
Transcription unit        Promoter
tyrTV-tpr
tyrV-tpr


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1556 1288063 reverse nd [RS-EPT-CBR] [4]
  promoter TSS_1557 1288077 reverse nd [RS-EPT-CBR] [4]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Abelson J., Barnett L., Brenner S., Gefter M., Landy A., Russell R., Smith JD., 1969, Mutant tyrosine transfer ribonucleic acids., FEBS Lett 3(1):1-4

 [2] Addepalli B., Limbach PA., 2016, Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) Is Catalyzed by the Dual Specificity Enzyme RluF., J Biol Chem 291(42):22327-22337

 [3] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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