RegulonDB

Gene
Name:	ydcV
Synonym(s):	ECK1437, G6754, b1443
Genome position(nucleotides):	1514762 --> 1515556
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.96
External database links:

ASAP:	ABE-0004809
ECHOBASE:	EB3528
ECOLIHUB:	ydcV
OU-MICROARRAY:	b1443
STRING:	511145.b1443
COLOMBOS:	ydcV

Product

Name:

putative ABC transporter membrane subunit YdcV

Synonym(s):

YdcV

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

28.722

Isoelectric point:

9.238

Motif(s):

Type	Positions	Sequence	Comment
	13 -> 33	AAWGGVVFLHFPILIIAAYAF	UniProt: Helical.
	65 -> 252	VTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVALLVMLVTTLPILG	UniProt: ABC transmembrane type-1.
	71 -> 91	VAALATLIALVLGTLAAAALW	UniProt: Helical.
	80 -> 247	LVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVALLVMLVTT
	101 -> 121	ISLLLLLPIALPGIVTGLALL	UniProt: Helical.

Classification:

Multifun Terms (GenProtEC)
		6 - cell structure --> 6.1 - membrane
		4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane GO:0043190 - ATP-binding cassette (ABC) transporter complex GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
	biological_process	GO:0055085 - transmembrane transport GO:0009290 - DNA import into cell involved in transformation

Note(s):

Note(s): ...[more].

Reference(s):

[1] Jindal S., et al., 2019
[2] Moussatova A., et al., 2008

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

UNIPROT:

Operon

Name:

ydcSTUV-patD

Operon arrangement:

Transcription unit	Promoter
ydcSTUV-patD	ydcSp1
patD

Transcriptional Regulation
	Display Regulation
Activated by:	Nac

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	patDp3	1515415		forward	nd	[COMP-AINF]	[3]
	promoter	patDp4	1515440		forward	nd	[COMP-AINF]	[3]

Evidence
[COMP-AINF] Inferred computationally without human oversight

Reference(s)
[1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195
[2] Moussatova A., Kandt C., O'Mara ML., Tieleman DP., 2008, ATP-binding cassette transporters in Escherichia coli., Biochim Biophys Acta 1778(9):1757-71
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78