RegulonDB RegulonDB 10.8: Gene Form
   

rhsE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsE ydcD yncH yncO TSS_1825 TSS_1825

Gene      
Name: rhsE    Texpresso search in the literature
Synonym(s): ECK1450, EG10010, b1456
Type: Pseudo Gene
Genome position(nucleotides): 1527890 --> 1529938 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
58.17
External database links:  
ASAP:
ABE-0004858
CGSC:
33720
ECHOBASE:
EB0010
OU-MICROARRAY:
b1456
PortEco:
rhsE
STRING:
316407.1742368
COLOMBOS: rhsE


Product      
Name: RhsE protein in rhs element
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.198
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Lin RJ., et al., 1984
External database links:  
DIP:
DIP-10703N
ECOCYC:
EG10010-MONOMER
ECOLIWIKI:
b1456
INTERPRO:
IPR022385
INTERPRO:
IPR001826
MINT:
MINT-1319693
PFAM:
PF03527
PRIDE:
P24211
PRINTS:
PR00394
REFSEQ:
NP_415973
UNIPROT:
P24211


Operon      
Name: rhsE-ydcD         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1825 1530150 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Lin RJ., Capage M., Hill CW., 1984, A repetitive DNA sequence, rhs, responsible for duplications within the Escherichia coli K-12 chromosome., J Mol Biol 177(1):1-18

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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