RegulonDB RegulonDB 10.6.3: Gene Form
   

garL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

garP garR garL Fur

Gene      
Name: garL    Texpresso search in the literature
Synonym(s): ECK3114, EG10016, b3126, yhaF
Genome position(nucleotides): 3272787 <-- 3273557 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.92
External database links:  
ASAP:
ABE-0010276
ECHOBASE:
EB0016
ECOCYC:
EG10016
ECOLIHUB:
garL
OU-MICROARRAY:
b3126
REGULONDB:
b3126
STRING:
511145.b3126
M3D: garL
COLOMBOS: garL
PortEco: b3126


Product      
Name: α-dehydro-β-deoxy-D-glucarate aldolase
Synonym(s): GarL, YhaF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.384
Isoelectric point: 5.944
Motif(s):
 
Type Positions Sequence
20 -> 245 QIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRS

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0003824 - catalytic activity
GO:0016829 - lyase activity
GO:0046872 - metal ion binding
GO:0016830 - carbon-carbon lyase activity
GO:0016832 - aldehyde-lyase activity
GO:0008672 - 2-dehydro-3-deoxyglucarate aldolase activity
GO:0000287 - magnesium ion binding
biological_process GO:0019394 - glucarate catabolic process
GO:0046392 - galactarate catabolic process
GO:0042838 - D-glucarate catabolic process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-9740N
ECOCYC:
KDGALDOL-MONOMER
ECOLIWIKI:
b3126
INTERPRO:
IPR015813
INTERPRO:
IPR017648
INTERPRO:
IPR005000
MODBASE:
P23522
PDB:
1DXE
PDB:
1DXF
PFAM:
PF03328
PRIDE:
P23522
PRODB:
PRO_000022752
PROTEINMODELPORTAL:
P23522
REFSEQ:
NP_417595
SMR:
P23522
UNIPROT:
P23522


Operon      
Name: garPLRK-rnpB         
Operon arrangement:
Transcription unit        Promoter
rnpB
garPLRK-rnpB


Transcriptional Regulation      
Display Regulation             
Activated by: FNR, CdaR
Repressed by: Fur, H-NS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB