Gene
Name:	dnaJ
Synonym(s):	ECK0015, EG10240, b0015, groP, grpC
Genome position(nucleotides):	14168 --> 15298 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	55.17
Reference(s):	[1] Ohki M., et al., 1986 [2] Saito H., et al., 1978 [3] Yochem J., et al., 1978
External database links:

ASAP:	ABE-0000054
CGSC:	845
ECHOBASE:	EB0236
OU-MICROARRAY:	b0015
PortEco:	dnaJ
STRING:	511145.b0015
COLOMBOS:	dnaJ

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_28	12891	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_29	13044	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_30	13046	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_31 (cluster)	13048	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 13048 to 13049, where the highest frequency is at position 13048. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[4]
promoter	TSS_32 (cluster)	13052	forward	For this promoter, there is a cluster of 4 transcription start sites,in the interval 13052 to 13055, where the highest frequency is at position 13052. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[4]
promoter	TSS_33	13058	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_34	13064	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_35 (cluster)	13082	forward	For this promoter, there is a cluster of 3 transcription start sites,in the interval 13082 to 13084, where the highest frequency is at position 13083. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[4]
promoter	TSS_36	13111	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_37	13127	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_38	13129	forward	nd	[RS-EPT-CBR]	[4]
promoter	insLp5	15380	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.88. P-value: 1.423e-5 Read more >	[ICWHO]	[5]
promoter	insLp6	15436	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 5.026. P-value: 2.370e-5 Read more >	[ICWHO]	[5]
promoter	TSS_39	15463	forward	nd	[RS-EPT-CBR]	[4]
promoter	TSS_40	15553	forward	nd	[RS-EPT-CBR]	[4]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Ohki M., Tamura F., Nishimura S., Uchida H., 1986, Nucleotide sequence of the Escherichia coli dnaJ gene and purification of the gene product., J Biol Chem 261(4):1778-81
[2] Saito H., Uchida H., 1978, Organization and expression of the dnaJ and dnaK genes of Escherichia coli K12., Mol Gen Genet 164(1):1-8
[3] Yochem J., Uchida H., Sunshine M., Saito H., Georgopoulos CP., Feiss M., 1978, Genetic analysis of two genes, dnaJ and dnaK, necessary for Escherichia coli and bacteriophage lambda DNA replication., Mol Gen Genet 164(1):9-14
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[5] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RNA cis-regulatory element

Attenuation:	Translational