RegulonDB RegulonDB 8.6: Gene Form
   

glpD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glpD glpE yzgL GlpR GlpR GlpR GlpR CRP glpDp glpDp glpEp glpEp

Gene      
Name: glpD    Texpresso search in the literature
Synonym(s): glyD
Genome position(nucleotides): 3560036 --> 3561541 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.05
Reference(s): [1] Persson M., et al., 2000
External database links:  
ECOCYC:
EG10394
OU-MICROARRAY:
b3426
M3D: glpD
COLOMBOS: glpD
PortEco: b3426


Shine dalgarno      
Sequence: aacgaaagtgAATGAGggcagcATG


Product      
Name: GlpD
Synonym(s): GlyD
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,cytosol
Molecular weight: 56.751
Isoelectric point: 7.49
Motif(s):
 
Type Positions Sequence
464 -> 501 DDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS
328 -> 353 QAITRDYTLDIHDENGKAPLLSVFGG
23 -> 23 A
5 -> 33 DLIVIGGGINGAGIAADAAGRGLSVLMLE

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.3 - energy metabolism, carbon --> 1.3.6 - aerobic respiration
  1 - metabolism --> 1.4 - energy production/transport --> 1.4.1 - electron donors
  1 - metabolism --> 1.7 - central intermediary metabolism --> 1.7.6 - misc. glycerol metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005887 - integral component of plasma membrane
GO:0009331 - glycerol-3-phosphate dehydrogenase complex
molecular_function GO:0009055 - electron carrier activity
GO:0016491 - oxidoreductase activity
GO:0004368 - glycerol-3-phosphate dehydrogenase activity
GO:0052590 - sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity
GO:0052591 - sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
biological_process GO:0006071 - glycerol metabolic process
GO:0006072 - glycerol-3-phosphate metabolic process
GO:0019563 - glycerol catabolic process
GO:0046168 - glycerol-3-phosphate catabolic process
GO:0055114 - oxidation-reduction process
External database links:  
ECOCYC:
AERGLYC3PDEHYDROG-MONOMER
EXPASY:
EC-1.1.5.3
GENPROTEC:
b3426
PDB:
2R4J
PDB:
2R4E
PDB:
2R46
PDB:
2QCU
PDB:
2R45


Operon      
Name: glpD         
Operon arrangement:
Transcription unit        Promoter
glpD


Reference(s)    

 [1] Persson M., Glatz E., Rutberg B., 2000, Different processing of an mRNA species in Bacillus subtilis and Escherichia coli., J Bacteriol. 182(3):689-95


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