RegulonDB RegulonDB 10.8: Gene Form
   

sohB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sohB yciK yciN btuR CRP CRP sohBp2 sohBp2 sohBp1 sohBp1

Gene      
Name: sohB    Texpresso search in the literature
Synonym(s): ECK1266, EG10956, b1272
Genome position(nucleotides): 1329332 --> 1330381 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.57
External database links:  
ASAP:
ABE-0004267
CGSC:
31951
ECHOBASE:
EB0949
OU-MICROARRAY:
b1272
PortEco:
sohB
STRING:
511145.b1272
COLOMBOS: sohB


Shine dalgarno      
Sequence: gtttaaccaaGGTGGGgactcGTG


Product      
Name: S49 peptidase family protein
Synonym(s): SohB
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 39.366
Isoelectric point: 9.809
Motif(s):
 
Type Positions Sequence
85 -> 85 A
90 -> 90 A
133 -> 138 PQDQVV
9 -> 29 LFLAKIVTVVLAIAAIAAIIV
164 -> 164 K

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.2 - degradation of macromolecules --> 1.2.3 - proteins/peptides/glycopeptides
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0008233 - peptidase activity
GO:0016787 - hydrolase activity
GO:0004252 - serine-type endopeptidase activity
GO:0008236 - serine-type peptidase activity
biological_process GO:0006508 - proteolysis
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
[IGI] Inferred from genetic interaction
Reference(s): [1] Baird L., et al., 1991
External database links:  
DIP:
DIP-35930N
ECOCYC:
EG10956-MONOMER
ECOLIWIKI:
b1272
INTERPRO:
IPR002142
INTERPRO:
IPR029045
INTERPRO:
IPR013703
MODBASE:
P0AG14
PFAM:
PF01343
PFAM:
PF08496
PRIDE:
P0AG14
REFSEQ:
NP_415788
SMR:
P0AG14
UNIPROT:
P0AG14


Operon      
Name: sohB         
Operon arrangement:
Transcription unit        Promoter
sohB
sohB


Transcriptional Regulation      
Display Regulation             
Repressed by: CRP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Baird L., Lipinska B., Raina S., Georgopoulos C., 1991, Identification of the Escherichia coli sohB gene, a multicopy suppressor of the HtrA (DegP) null phenotype., J Bacteriol 173(18):5763-70


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