Gene
Name:	trmD
Synonym(s):	ECK2604, EG11023, b2607
Genome position(nucleotides):	2744572 <-- 2745339 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.39
External database links:

ASAP:	ABE-0008576
CGSC:	76
ECHOBASE:	EB1016
OU-MICROARRAY:	b2607
PORTECO:	trmD
REGULONDB:	b2607
STRING:	511145.b2607
M3D:	trmD
COLOMBOS:	trmD
PortEco:	b2607

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2947	2744532	reverse	nd	[RS-EPT-CBR]	[5]
promoter	rplSp1	2744642	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 0.06. P-value: 1.291e-6 Read more >	[ICWHO]	[6]
promoter	TSS_2948	2744644	reverse	nd	[RS-EPT-CBR]	[5]
promoter	TSS_2949	2744647	reverse	nd	[RS-EPT-CBR]	[5]
promoter	TSS_2950	2744657	reverse	nd	[RS-EPT-CBR]	[5]
promoter	TSS_2951	2744665	reverse	nd	[RS-EPT-CBR]	[5]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Ashtawy HM., Mahapatra NR., 2018, Boosted neural networks scoring functions for accurate ligand docking and ranking., J Bioinform Comput Biol 16(2):1850004
[2] Christian T., Evilia C., Williams S., Hou YM., 2004, Distinct origins of tRNA(m1G37) methyltransferase., J Mol Biol 339(4):707-19
[3] Hou YM., 2016, Single-Turnover Kinetics of Methyl Transfer to tRNA by Methyltransferases., Methods Mol Biol 1421:79-96
[4] Masuda I., Matsubara R., Christian T., Rojas ER., Yadavalli SS., Zhang L., Goulian M., Foster LJ., Huang KC., Hou YM., 2019, tRNA Methylation Is a Global Determinant of Bacterial Multi-drug Resistance., Cell Syst 8(4):302-314.e8
[5] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[6] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Transcriptional Regulation
	Display Regulation
Repressed by:	FNR