RegulonDB RegulonDB 10.8: Gene Form
   

yciG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

trpA yciF yciG H-NS McbR H-NS McbR terminator yciGp yciGp yciEp2 yciEp2 yciEp yciEp yciEp7 yciEp7

Gene      
Name: yciG    Texpresso search in the literature
Synonym(s): ECK1253, EG11127, b1259
Genome position(nucleotides): 1315856 <-- 1316035 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.11
External database links:  
ASAP:
ABE-0004229
ECHOBASE:
EB1117
OU-MICROARRAY:
b1259
PortEco:
yciG
STRING:
511145.b1259
COLOMBOS: yciG


Product      
Name: stress-induced bacterial acidophilic repeat motifs-containing protein YciG
Synonym(s): YciG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 6.002
Isoelectric point: 10.657
Motif(s):
 
Type Positions Sequence
32 -> 52 NFKNDPQRASEAGKKGGQQSG
10 -> 30 NFAEDREKASDAGRKGGQHSG
28 -> 28 H

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0071978 - bacterial-type flagellum-dependent swarming motility
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11127-MONOMER
ECOLIWIKI:
b1259
INTERPRO:
IPR019626
PFAM:
PF10685
PRIDE:
P21361
REFSEQ:
NP_415775
UNIPROT:
P21361


Operon      
Name: yciGFE         
Operon arrangement:
Transcription unit        Promoter
yciE
yciG
yciGFE


Transcriptional Regulation      
Display Regulation             
Activated by: McbR
Repressed by: H-NS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yciEp7 1315321 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yciEp2 1315397 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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