RegulonDB RegulonDB 10.9: Gene Form
   

yigB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

uvrD xerC yigB yigA yigE5\' dapF LexA terminator TSS_4475 TSS_4475 TSS_4474 TSS_4474 uvrDp2 uvrDp2 uvrDp1 uvrDp1 TSS_4472 TSS_4472 TSS_4471 TSS_4471 TSS_4470 TSS_4470 TSS_4469 TSS_4469 TSS_4468 (cluster) TSS_4468 (cluster)

Gene      
Name: yigB    Texpresso search in the literature
Synonym(s): ECK3807, EG11202, b3812
Genome position(nucleotides): 3997183 --> 3997899 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.79
External database links:  
ASAP:
ABE-0012450
ECHOBASE:
EB1187
ECOLIHUB:
yigB
OU-MICROARRAY:
b3812
STRING:
511145.b3812
COLOMBOS: yigB


Product      
Name: 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase
Synonym(s): YigB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.122
Isoelectric point: 6.402
Motif(s):
 
Type Positions Sequence
200 -> 200 S
16 -> 18 DLD
13 -> 13 L
15 -> 207 FDLDDTLYDNRPVILRTEREALTFVQNYHPALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAMINFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWI

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.5 - biosynthesis of building blocks --> 1.5.3 - cofactors, small molecule carriers --> 1.5.3.9 - riboflavin
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0016791 - phosphatase activity
GO:0000287 - magnesium ion binding
GO:0043726 - 5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity
biological_process GO:0009231 - riboflavin biosynthetic process
GO:0016311 - dephosphorylation
GO:0022611 - dormancy process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48086N
ECOCYC:
EG11202-MONOMER
ECOLIWIKI:
b3812
INTERPRO:
IPR041492
INTERPRO:
IPR023214
INTERPRO:
IPR006439
INTERPRO:
IPR036412
MODBASE:
P0ADP0
PFAM:
PF13419
PRIDE:
P0ADP0
REFSEQ:
NP_418257
SMR:
P0ADP0
UNIPROT:
P0ADP0


Operon      
Name: yifL-dapF-yigA-xerC-yigB         
Operon arrangement:
Transcription unit        Promoter
yifL-dapF-yigA-xerC-yigB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4468 (cluster) 3995868 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_4469 3995958 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4470 3996295 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4471 3996562 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4472 3997751 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4474 3998622 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4475 3998664 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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