RegulonDB RegulonDB 10.8: Gene Form
   

ydfB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydfC ydfA ydfB

Gene      
Name: ydfB    Texpresso search in the literature
Synonym(s): ECK1566, EG11301, b1572
Genome position(nucleotides): 1648665 --> 1648793 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.51
External database links:  
ASAP:
ABE-0005253
ECHOBASE:
EB1278
OU-MICROARRAY:
b1572
PortEco:
ydfB
STRING:
511145.b1572
COLOMBOS: ydfB


Product      
Name: Qin prophage; uncharacterized protein YdfB
Synonym(s): YdfB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 4.688
Isoelectric point: 3.77
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
EG11301-MONOMER
ECOLIWIKI:
b1572
PRIDE:
P29009
REFSEQ:
NP_416090
UNIPROT:
P29009


Operon      
Name: ydfABC         
Operon arrangement:
Transcription unit        Promoter
ydfABC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056


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