RegulonDB RegulonDB 10.7: Gene Form
   

ydfB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydfC ydfA ydfB

Gene      
Name: ydfB    Texpresso search in the literature
Synonym(s): ECK1566, EG11301, b1572
Genome position(nucleotides): 1648665 --> 1648793 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.51
External database links:  
ASAP:
ABE-0005253
ECHOBASE:
EB1278
OU-MICROARRAY:
b1572
PORTECO:
ydfB
REGULONDB:
b1572
STRING:
511145.b1572
M3D: ydfB
COLOMBOS: ydfB
PortEco: b1572


Product      
Name: Qin prophage; uncharacterized protein YdfB
Synonym(s): YdfB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 4.688
Isoelectric point: 3.77
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
EG11301-MONOMER
ECOLIWIKI:
b1572
PRIDE:
P29009
PROTEINMODELPORTAL:
P29009
REFSEQ:
NP_416090
UNIPROT:
P29009


Operon      
Name: ydfABC         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056


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