RegulonDB RegulonDB 8.7: Gene Form
   

malS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

malS avtA bax MalT MalT MalT PhoP CRP terminator anti-terminator anti-anti-terminator avtAp avtAp malSp malSp TSS_3828 TSS_3828 baxp7 baxp7 baxp5 baxp5 TSS_3827 TSS_3827

Gene      
Name: malS    Texpresso search in the literature
Synonym(s): b3571
Genome position(nucleotides): 3735520 --> 3737550 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.83
External database links:  
ECOCYC:
EG11316
GENBANK:
1789995
GENBANK_RefSeq:
16131442
OU-MICROARRAY:
b3571
M3D: malS
COLOMBOS: malS
PortEco: b3571


Product      
Name: α-amylase
Synonym(s): MalS
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 75.713
Isoelectric point: 5.35
Motif(s):
 
Type Positions Sequence
1 -> 17 MKLAACFLTLLPGFAVA
18 -> 676 ASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRECPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFVREHGDDKVLVVWAGQQ

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
ALPHA-AMYL-PERI-MONOMER
EXPASY:
EC-3.2.1.1
GENPROTEC:
b3571


Operon      
Name: malS         
Operon arrangement:
Transcription unit        Promoter
malS


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3827 3734997 reverse nd [RS-EPT-CBR] [1]
  promoter baxp5 3735244 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter baxp7 3735257 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_3828 3735263 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Mu¿¿iz-Rascado L, Garc¿¿a-Sotelo JS, Weiss V, Solano-Lira H, Mart¿¿nez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hern¿¿ndez S, Alquicira-Hern¿¿ndez K, L¿¿pez-Fuentes A, Porr¿¿n-Sotelo L, Huerta AM, Bonavides-Mart¿¿nez C, Balderas-Mart¿¿nez YI, Pannier L, Olvera M, Labastida A, Jim¿¿nez-Jacinto V, Vega-Alvarado L, Del Moral-Ch¿¿vez V, Hern¿¿ndez-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol. 333(2):261-78


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