RegulonDB RegulonDB 10.9: Gene Form
   

waaB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

waaB waaO waaJ waaS SoxS MarA TSS_4210 (cluster) TSS_4210 (cluster) waaYp waaYp

Gene      
Name: waaB    Texpresso search in the literature
Synonym(s): ECK3618, EG11351, b3628, lps, rfaB, syn
Genome position(nucleotides): 3803058 <-- 3804137 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
39.63
External database links:  
ASAP:
ABE-0011862
CGSC:
17617
ECHOBASE:
EB1326
ECOLIHUB:
rfaB
NCBI-GENE:
948144
OU-MICROARRAY:
b3628
STRING:
511145.b3628
COLOMBOS: waaB


Product      
Name: UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
Synonym(s): Lps, RfaB, Syn, WaaB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 40.826
Isoelectric point: 6.781
Motif(s):
 
Type Positions Sequence
176 -> 323 GETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNIDDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPADIIQPDVNGHLYQPGDIAGFVTLLNKYIAGE
13 -> 166 FGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSFSNIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVISCLFAAKARKKSGIDMPVFSWPHFSLDHKKHAEYITCADYHLAISSGIKQQMINRGVAESTINVIFNPVETK

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.3 - surface antigens (ECA, O antigen of LPS)
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016757 - transferase activity, transferring glycosyl groups
GO:0008921 - lipopolysaccharide-1,6-galactosyltransferase activity
GO:0016740 - transferase activity
biological_process GO:0009103 - lipopolysaccharide biosynthetic process
GO:0009244 - lipopolysaccharide core region biosynthetic process
Note(s): Note(s): ...[more].
External database links:  
CAZY:
GT4
DIP:
DIP-10663N
ECOCYC:
EG11351-MONOMER
ECOLIWIKI:
b3628
INTERPRO:
IPR001296
INTERPRO:
IPR028098
MODBASE:
P27127
PFAM:
PF13439
PFAM:
PF00534
PRIDE:
P27127
PRODB:
PRO_000023716
REFSEQ:
NP_418085
SMR:
P27127
UNIPROT:
P27127


Operon      
Name: rirA-waaQGPSBOJYZU         
Operon arrangement:
Transcription unit        Promoter
rfaYZ
rfaQGPSBIJYZ-waaU
rirA-rfaQGPSBIJYZ-waaU
rfaZ-waaU


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4210 (cluster) 3804751 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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