RegulonDB RegulonDB 10.9: Gene Form
   

yjaZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rpoC yjaZ sroH terminator terminator sroHp sroHp yjaZp yjaZp TSS_4816 TSS_4816 TSS_4815 TSS_4815 TSS_4814 TSS_4814 TSS_4813 TSS_4813 TSS_4812 TSS_4812 TSS_4811 TSS_4811 TSS_4810 TSS_4810 TSS_4809 TSS_4809 TSS_4808 TSS_4808 TSS_4807 (cluster) TSS_4807 (cluster) TSS_4806 TSS_4806 TSS_4805 TSS_4805 TSS_4804 TSS_4804 TSS_4803 TSS_4803 TSS_4802 TSS_4802 TSS_4801 TSS_4801 TSS_4800 TSS_4800 TSS_4799 TSS_4799 TSS_4798 TSS_4798 TSS_4797 TSS_4797 TSS_4796 TSS_4796 TSS_4795 TSS_4795 TSS_4794 TSS_4794 TSS_4793 TSS_4793 TSS_4792 TSS_4792 TSS_4791 TSS_4791 TSS_4790 TSS_4790 TSS_4789 TSS_4789 TSS_4788 TSS_4788 TSS_4787 TSS_4787 TSS_4786 TSS_4786 TSS_4785 (cluster) TSS_4785 (cluster) TSS_4784 TSS_4784 TSS_4783 TSS_4783

Gene      
Name: yjaZ    Texpresso search in the literature
Synonym(s): ECK3980, EG11429, b3989, htrC
Genome position(nucleotides): 4189786 --> 4190325 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.41
External database links:  
ASAP:
ABE-0013046
CGSC:
34265
ECHOBASE:
EB1399
ECOLIHUB:
yjaZ
OU-MICROARRAY:
b3989
STRING:
511145.b3989
COLOMBOS: yjaZ


Product      
Name: protein YjaZ
Synonym(s): HtrC, YjaZ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.131
Isoelectric point: 9.677
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11429-MONOMER
ECOLIWIKI:
b3989
PRIDE:
P27375
PRODB:
PRO_000022939
REFSEQ:
NP_418416
UNIPROT:
P27375


Operon      
Name: yjaZ         
Operon arrangement:
Transcription unit        Promoter
yjaZ


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4783 4185358 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4784 4185368 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4785 (cluster) 4185549 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_4786 4185586 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4787 4185599 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4788 4185695 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4789 4185757 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4790 4185780 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4791 4185843 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4792 4185874 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4793 4185950 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4794 4186015 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4795 4186042 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4796 4186146 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4797 4186176 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4798 4186193 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4799 4186200 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4800 4186215 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4801 4186234 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4802 4186296 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4803 4186488 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4804 4186490 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4805 4186492 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4806 4186542 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4807 (cluster) 4186544 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_4808 4186806 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4809 4187081 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4810 4187339 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4811 4187568 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4812 4187724 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4813 4188172 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4814 4188174 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4815 4188210 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4816 4188934 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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