RegulonDB RegulonDB 10.9: Gene Form
   

dinF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dinF lexA yjbJ TSS_4882 TSS_4882

Gene      
Name: dinF    Texpresso search in the literature
Synonym(s): ECK4036, EG11491, b4044
Genome position(nucleotides): 4257742 --> 4259121 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.72
External database links:  
ASAP:
ABE-0013243
CGSC:
854
ECHOBASE:
EB1454
ECOLIHUB:
dinF
OU-MICROARRAY:
b4044
STRING:
511145.b4044
COLOMBOS: dinF


Product      
Name: DNA damage-inducible protein F
Synonym(s): DinF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 49.646
Isoelectric point: 9.999
Motif(s):
 
Type Positions Sequence
63 -> 83 LGGVAVGATATSFLFMLLLFL
180 -> 200 VILLVVGNILNIVLDVWLVMG
207 -> 227 GAALATVIAEYATLLIGLLMV
111 -> 131 LLLALGAGALIALLRTPIIDL
259 -> 412 IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPVVGVWCYLLDGMFIGATRATEMRNSMAVAAAGF

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.1 - DNA related --> 2.1.4 - DNA repair
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  5 - cell processes --> 5.6 - protection --> 5.6.1 - radiation
  5 - cell processes --> 5.8 - SOS response
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015297 - antiporter activity
GO:0042910 - xenobiotic transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
GO:0042908 - xenobiotic transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
DINF-MONOMER
ECOLIWIKI:
b4044
INTERPRO:
IPR002528
PFAM:
PF01554
PRIDE:
P28303
PRODB:
PRO_000022448
REFSEQ:
NP_418468
UNIPROT:
P28303


Operon      
Name: lexA-dinF         
Operon arrangement:
Transcription unit        Promoter
lexA-dinF


Transcriptional Regulation      
Display Regulation             
Repressed by: LexA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4882 4257204 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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