RegulonDB RegulonDB 10.8: Gene Form
   

yceH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yceM yceH rimJ yceMp4 yceMp4 yceHp2 yceHp2 yceHp4 yceHp4

Gene      
Name: yceH    Texpresso search in the literature
Synonym(s): ECK1052, EG11537, b1067
Genome position(nucleotides): 1126157 --> 1126804 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.85
External database links:  
ASAP:
 ABE-0003625
ECHOBASE:
 EB1499
OU-MICROARRAY:
 b1067
PortEco:
 yceH
STRING:
 511145.b1067
COLOMBOS: yceH


Product      
Name: DUF480 domain-containing protein YceH
Synonym(s): YceH
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 24.177
Isoelectric point: 4.724
Motif(s):
 
Type Positions Sequence
133 -> 133 V
194 -> 194 A
5 -> 158 LTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGK

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
DIP:
 DIP-11527N
ECOCYC:
 EG11537-MONOMER
ECOLIWIKI:
 b1067
INTERPRO:
 IPR036388
INTERPRO:
 IPR007432
INTERPRO:
 IPR036390
MINT:
 MINT-1235937
PANTHER:
 PTHR38768
PFAM:
 PF04337
PRIDE:
 P29217
REFSEQ:
 NP_415585
SMR:
 P29217
UNIPROT:
 P29217


Operon      
Name: yceH         
Operon arrangement:
Transcription unit        Promoter
yceH


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yceHp4 1126077 forward Similarity to the consensus
Read more > 		[ICWHO] [2]
  promoter yceHp2 1126081 forward Similarity to the consensus
Read more > 		[ICWHO] [2]
  promoter yceMp4 1126604 forward Similarity to the consensus
Read more > 		[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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