RegulonDB RegulonDB 10.7: Gene Form
   

fixX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yaaU fixC fixB fixX terminator kefFp2 kefFp2 yaaUp yaaUp

Gene      
Name: fixX    Texpresso search in the literature
Synonym(s): ECK0045, EG11565, b0044, yaaT
Genome position(nucleotides): 45463 --> 45750 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.94
External database links:  
ASAP:
ABE-0000151
ECHOBASE:
EB1526
OU-MICROARRAY:
b0044
PORTECO:
fixX
REGULONDB:
b0044
STRING:
511145.b0044
M3D: fixX
COLOMBOS: fixX
PortEco: b0044


Product      
Name: putative ferredoxin FixX
Synonym(s): FixX, YaaT, putative ferredoxin possibly involved in anaerobic carnitine metabolism
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 10.479
Isoelectric point: 5.105
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.7 - central intermediary metabolism --> 1.7.22 - carnitine metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
GO:0046872 - metal ion binding
GO:0051536 - iron-sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005506 - iron ion binding
biological_process GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11565-MONOMER
ECOLIWIKI:
b0044
INTERPRO:
IPR012206
PANTHER:
PTHR43082
PRIDE:
P68646
PRODB:
PRO_000022631
PROSITE:
PS00198
PROTEINMODELPORTAL:
P68646
REFSEQ:
NP_414586
SMR:
P68646
UNIPROT:
P68646


Operon      
Name: fixABCX         
Operon arrangement:
Transcription unit        Promoter
fixABCX


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, FNR, CaiF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter kefFp2 47080 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB