Gene
Name:	djlA
Synonym(s):	ECK0056, EG11570, b0055, yabH
Genome position(nucleotides):	57364 --> 58179 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	52.7
External database links:

ASAP:	ABE-0000187
ECHOBASE:	EB1530
OU-MICROARRAY:	b0055
PortEco:	djlA
STRING:	511145.b0055
COLOMBOS:	djlA

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_96 (cluster)	54762	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 54761 to 54762, where the highest frequency is at position 54761. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_97	54765	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_98	54884	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_99	55120	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_100	55146	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_101	55785	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_102 (cluster)	55791	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 55790 to 55791, where the highest frequency is at position 55791. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_103 (cluster)	55800	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 55799 to 55800, where the highest frequency is at position 55800. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_104	55908	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_105	55916	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_106	55920	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_107	56036	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_108 (cluster)	56466	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 56465 to 56466, where the highest frequency is at position 56466. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	TSS_109	56724	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_112	57253	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_113	57261	forward	nd	[RS-EPT-CBR]	[2]
promoter	djlAp3	57268	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.073. P-value: 4.027e-5 Read more >	[ICWHO]	[3]
promoter	TSS_114	59042	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_115	59069	forward	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Genevaux P., Wawrzynow A., Zylicz M., Georgopoulos C., Kelley WL., 2001, DjlA is a third DnaK co-chaperone of Escherichia coli, and DjlA-mediated induction of colanic acid capsule requires DjlA-DnaK interaction., J Biol Chem 276(11):7906-12
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78