RegulonDB RegulonDB 10.7: Gene Form
   

ydeA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydeA yneK marC ArcA ydeAp ydeAp

Gene      
Name: ydeA    Texpresso search in the literature
Synonym(s): ECK1521, EG11636, b1528
Genome position(nucleotides): 1617028 --> 1618218 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.3
External database links:  
ASAP:
ABE-0005103
ECHOBASE:
EB1592
OU-MICROARRAY:
b1528
PORTECO:
ydeA
REGULONDB:
b1528
STRING:
511145.b1528
M3D: ydeA
COLOMBOS: ydeA
PortEco: b1528


Product      
Name: L-arabinose exporter
Synonym(s): YdeA, arabinose MFS transporter
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 42.538
Isoelectric point: 10.218
Motif(s):
 
Type Positions Sequence
50 -> 70 VGIMLTIYAWVVALMSLPFML
170 -> 190 FFAIGIGALITLLCLIKLLPL
15 -> 35 VVTLAVAAFIFNTTEFVPVGL
246 -> 266 FATALLLLLGGAGIIGSVIFG
209 -> 229 PALMSIYLLTVVVVTAHYTAY

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015144 - carbohydrate transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0055085 - transmembrane transport
GO:0034219 - carbohydrate transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Bost S., et al., 1999
[2] Carole S., et al., 1999
[3] Jindal S., et al., 2019
[4] Koita K., et al., 2012
External database links:  
ECOCYC:
YDEA-MONOMER
ECOLIWIKI:
b1528
INTERPRO:
IPR011701
INTERPRO:
IPR020846
INTERPRO:
IPR023495
INTERPRO:
IPR036259
MODBASE:
P31122
PFAM:
PF07690
PRIDE:
P31122
PRODB:
PRO_000023968
PROSITE:
PS50850
PROTEINMODELPORTAL:
P31122
REFSEQ:
NP_416045
SMR:
P31122
UNIPROT:
P31122


Operon      
Name: ydeA         
Operon arrangement:
Transcription unit        Promoter
ydeA


Transcriptional Regulation      
Display Regulation             
Repressed by: ArcA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Bost S., Silva F., Belin D., 1999, Transcriptional activation of ydeA, which encodes a member of the major facilitator superfamily, interferes with arabinose accumulation and induction of the Escherichia coli arabinose PBAD promoter., J Bacteriol 181(7):2185-91

 [2] Carole S., Pichoff S., Bouch JP., 1999, Escherichia coli gene ydeA encodes a major facilitator pump which exports L-arabinose and isopropyl-beta-D-thiogalactopyranoside., J Bacteriol 181(16):5123-5

 [3] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [4] Koita K., Rao CV., 2012, Identification and Analysis of the Putative Pentose Sugar Efflux Transporters in Escherichia coli., PLoS One 7(8):e43700


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