RegulonDB RegulonDB 10.8: Gene Form
   

yddA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yddB yddA yneP ydeM terminator yddBp6 yddBp6

Gene      
Name: yddA    Texpresso search in the literature
Synonym(s): ECK1490, EG11742, b1496
Genome position(nucleotides): 1577657 <-- 1579342 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.65
External database links:  
ASAP:
ABE-0004984
ECHOBASE:
EB1693
MIM:
614857
OU-MICROARRAY:
b1496
PortEco:
yddA
STRING:
511145.b1496
COLOMBOS: yddA


Product      
Name: ABC transporter family protein YddA
Synonym(s): YddA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 64.985
Isoelectric point: 9.721
Motif(s):
 
Type Positions Sequence
4 -> 24 IPITLRMLIAKYLCLLKPFWL
32 -> 52 VLLIIIILAMILGVVKIQVWL
35 -> 337 IIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAE
400 -> 407 GYSGAGKT
291 -> 311 VLPYFLLLPQFISGQINLGGL

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.am - ABC superfamily, ATP binding and membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0016887 - ATPase activity
GO:0042626 - ATPase-coupled transmembrane transporter activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
YDDA-MONOMER
ECOLIWIKI:
b1496
INTERPRO:
IPR017871
INTERPRO:
IPR036640
INTERPRO:
IPR027417
INTERPRO:
IPR011527
INTERPRO:
IPR003593
INTERPRO:
IPR003439
MODBASE:
P31826
PFAM:
PF06472
PFAM:
PF00005
PRIDE:
P31826
PROSITE:
PS50893
PROSITE:
PS00211
PROSITE:
PS50929
REFSEQ:
NP_416013
SMART:
SM00382
SMR:
P31826
UNIPROT:
P31826


Operon      
Name: yddAB         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yddBp6 1577666 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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