RegulonDB RegulonDB 10.8: Gene Form
   

yciK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sohB rluB yciK btuR CRP CRP sohBp2 sohBp2 sohBp1 sohBp1 TSS_1708 TSS_1708 TSS_1707 TSS_1707 TSS_1706 TSS_1706 TSS_1705 TSS_1705 TSS_1704 (cluster) TSS_1704 (cluster)

Gene      
Name: yciK    Texpresso search in the literature
Synonym(s): ECK1265, EG11759, b1271
Genome position(nucleotides): 1328354 <-- 1329112 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.44
External database links:  
ASAP:
 ABE-0004263
ECHOBASE:
 EB1709
OU-MICROARRAY:
 b1271
PortEco:
 yciK
STRING:
 511145.b1271
COLOMBOS: yciK


Product      
Name: putative oxidoreductase
Synonym(s): YciK
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.933
Isoelectric point: 7.936
Motif(s):
 
Type Positions Sequence
16 -> 40 LVTGASDGIGREAAMTYARYGATVI
63 -> 63 Q
14 -> 208 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPT

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
biological_process GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 EG11759-MONOMER
ECOLIWIKI:
 b1271
INTERPRO:
 IPR036291
INTERPRO:
 IPR020904
INTERPRO:
 IPR002347
MODBASE:
 P31808
PANTHER:
 PTHR24322
PDB:
 3F1L
PDB:
 3F1K
PDB:
 3E9Q
PFAM:
 PF00106
PRIDE:
 P31808
PRINTS:
 PR00081
PROSITE:
 PS00061
REFSEQ:
 NP_415787
SMR:
 P31808
UNIPROT:
 P31808


Operon      
Name: yciK-btuR         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1704 (cluster) 1326918 forward For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_1705 1326921 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1706 1326973 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1707 1326992 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1708 1327047 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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