RegulonDB RegulonDB 10.8: Gene Form
   

ydcD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsE yncI ydcD yncH yncO TSS_1825 TSS_1825

Gene      
Name: ydcD    Texpresso search in the literature
Synonym(s): ECK1451, EG11760, b1457
Genome position(nucleotides): 1529922 --> 1530404 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
27.33
External database links:  
ASAP:
ABE-0004861
ECHOBASE:
EB1710
ECOO157CYC:
Z0274
OU-MICROARRAY:
b1457
PortEco:
ydcD
STRING:
511145.b1457
COLOMBOS: ydcD


Product      
Name: uncharacterized protein YdcD
Synonym(s): YdcD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 18.907
Isoelectric point: 8.96
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
EG11760-MONOMER
ECOLIWIKI:
b1457
ECOO157CYC:
Z0274-MONOMER
PRIDE:
P31991
REFSEQ:
NP_415974
UNIPROT:
P31991


Operon      
Name: rhsE-ydcD         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1825 1530150 forward nd [RS-EPT-CBR] [2]
  promoter pptAp7 1532858 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter pptAp6 1532867 forward Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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