RegulonDB

Gene
Name:	yneO
Synonym(s):	ECK1502, ECK1503, EG11780, b1509, b1510, b4696, orfT, ydeK, ydeU
Type:	Pseudo Gene
Genome position(nucleotides):	1592665 <-- 1598086 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.41
External database links:

ASAP:	ABE-0005037
ASAP:	ABE-0285161
ASAP:	ABE-0005035
ECHOBASE:	EB1728
ECHOBASE:	EB3564
ECOLIWIKI:	b1509
OU-MICROARRAY:	b1509
OU-MICROARRAY:	b1510
PortEco:	ydeU
PortEco:	ydeK
STRING:	316407.85674998
UNIPROT:	P77286
UNIPROT:	P32051
COLOMBOS:	yneO

Product

Name:

AIDA-I family autotransporter YneO

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

7.029

Motif(s):

Type	Positions	Sequence
	884 -> 884	N
	1317 -> 1317	M
	19 -> 1325	CSELTRRAGKTSTVNLRKSSGLTTKFSRLTLGVLLALSGSASGASLEVDNDQITNIDTDVAYDAYLVGWYGTGVLNILAGGNASLTTITTSVIGANEDSEGTVNVLGGTWRLYDSGNNARPLNVGQSGTGTLNIKQKGHVDGGYLRLGSSTGGVGTVNVEGEDSVLTTELFEIGSYGTGSLNITDKGYVTSSIVAILGYQAGSNGQVVVEKGGEWLIKNNDSSIEFQIGNQGTGEATIREGGLVTAENTIIGGNATGIGTLNVQDQDSVITVRRLYNGYFGNGTVNISNNGLINNKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGDGELNVSSEGKVDSGIITAGMKETGTGNITVKDKNSVITNLGTNLGYDGHGEMNISNQGLVVSNGGSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVAGVGNLNISDGGKFVSQNITFLGDKASGIGTLNLMDATSSFDTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNISTDSLWNLKTSSTNAQLLQVGVLGTGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLLETFNMYVGTSGTGTLTLTNNGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGFITNATKVEFGLGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQLSSSDKMFGFTHATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSIGGLAMNGGTIIFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKPWNDPMANNPLTTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQNGTVVAEGDYGFRLTTAPGNGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGGEGDLAINTVRQVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGSTQTVETFTGQMGSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTSISPNAEVSLDNTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNSRFVGQFNIDTGSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGILTLNNDSAAYQGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDMNVMPGGGTACR
	1 -> 18	MNRIYRVIWNCTLQVFQA

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

Note(s):

Note(s): ...[more].

Reference(s):

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Reference(s)
[1] Gonnet P., Rudd KE., Lisacek F., 2004, Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12., Proteomics 4(6):1597-613
[2] Roux A., Beloin C., Ghigo JM., 2005, Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins., J Bacteriol 187(3):1001-13
[3] Yen MR., Peabody CR., Partovi SM., Zhai Y., Tseng YH., Saier MH., 2002, Protein-translocating outer membrane porins of Gram-negative bacteria., Biochim Biophys Acta 1562(1-2):6-31

RNA cis-regulatory element

Attenuation:	Transcriptional