RegulonDB RegulonDB 10.8: Gene Form
   

psuT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

psuT psuG yeiL psuK psuTp2 psuTp2

Gene      
Name: psuT    Texpresso search in the literature
Synonym(s): ECK2157, EG12032, b2164, pscT, yeiM
Genome position(nucleotides): 2256085 <-- 2257335 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.08
External database links:  
ASAP:
 ABE-0007163
ECHOBASE:
 EB1967
OU-MICROARRAY:
 b2164
PortEco:
 yeiM
STRING:
 511145.b2164
COLOMBOS: psuT


Product      
Name: putative pseudouridine transporter
Synonym(s): PscT, PsuT, YeiM
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 43.432
Isoelectric point: 8.609
Motif(s):
 
Type Positions Sequence
395 -> 415 LAAATLSNLMSATIAGFFIGL
3 -> 23 IMRSVVGMVVLLAIAFLLSVN
201 -> 412 YLLAASLMAIPGGILFARILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALINGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVAYLSFSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGLRALAAATLSNLMSATIAGFF
32 -> 52 VGAALLLQIAIGGIMLYFPPG
105 -> 125 IIFVTALISLLYYIGVMGLLI

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005337 - nucleoside transmembrane transporter activity
biological_process GO:1901642 - nucleoside transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-11925N
ECOCYC:
 YEIM-MONOMER
ECOLIWIKI:
 b2164
INTERPRO:
 IPR002668
INTERPRO:
 IPR018270
INTERPRO:
 IPR011657
INTERPRO:
 IPR008276
MINT:
 MINT-1248538
PANTHER:
 PTHR10590
PFAM:
 PF01773
PFAM:
 PF07662
PRIDE:
 P33024
REFSEQ:
 NP_416669
SMR:
 P33024
UNIPROT:
 P33024


Operon      
Name: psuT         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter psuTp2 2257496 reverse Similarity to the consensus
Read more > 		[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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