RegulonDB RegulonDB 10.8: Gene Form
   

rdgC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rdgC mak ykiD ykiA makp4 makp4

Gene      
Name: rdgC    Texpresso search in the literature
Synonym(s): ECK0388, EG12158, b0393, yaiD
Genome position(nucleotides): 409108 <-- 410019 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.54
External database links:  
ASAP:
ABE-0001366
ECHOBASE:
EB2078
OU-MICROARRAY:
b0393
PortEco:
rdgC
STRING:
511145.b0393
COLOMBOS: rdgC


Product      
Name: nucleoid-associated protein RdgC
Synonym(s): RdgC, YaiD
Sequence: Get amino acid sequence Fasta Format
Cellular location: bacterial nucleoid,cytosol
Molecular weight: 33.993
Isoelectric point: 5.041
Motif(s):
 
Type Positions Sequence
2 -> 300 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.1 - DNA related --> 2.1.1 - DNA replication
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0009295 - nucleoid
GO:0043590 - bacterial nucleoid
molecular_function GO:0003697 - single-stranded DNA binding
GO:0003690 - double-stranded DNA binding
biological_process GO:0006310 - DNA recombination
GO:0000018 - regulation of DNA recombination
Note(s): Note(s): ...[more].
Evidence: [APPHINH] Assay of protein purified to homogeneity from its native host
Reference(s): [1] Cromie GA., et al., 2000
[2] Drees JC., et al., 2006
External database links:  
DIP:
DIP-10649N
ECOCYC:
EG12158-MONOMER
ECOLIWIKI:
b0393
INTERPRO:
IPR007476
PANTHER:
PTHR38103
PDB:
2OWL
PFAM:
PF04381
PRIDE:
P36767
PRODB:
PRO_000023694
REFSEQ:
NP_414927
SMR:
P36767
UNIPROT:
P36767


Operon      
Name: rdgC         
Operon arrangement:
Transcription unit        Promoter
rdgC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter makp4 410118 forward Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Cromie GA., Millar CB., Schmidt KH., Leach DR., 2000, Palindromes as substrates for multiple pathways of recombination in Escherichia coli., Genetics 154(2):513-22

 [2] Drees JC., Chitteni-Pattu S., McCaslin DR., Inman RB., Cox MM., 2006, Inhibition of RecA protein function by the RdgC protein from Escherichia coli., J Biol Chem 281(8):4708-17

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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