RegulonDB

Gene
Name:	gatC
Synonym(s):	ECK2085, EG12416, b2092
Type:	Pseudo Gene
Genome position(nucleotides):	2172921 <-- 2174278 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.25
External database links:

ASAP:	ABE-0006928
ECHOBASE:	EB2315
OU-MICROARRAY:	b2092
PortEco:	gatC
STRING:	511145.b2092
UNIPROT:	P69831
COLOMBOS:	gatC

Product

Name:

galactitol-specific PTS enzyme IIC component

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

10.613

Motif(s):

Type	Positions	Sequence
	92 -> 112	ASQIALVAIPIAILVNVAMLL
	9 -> 29	ILDLGPTVMLPIVIIIFSKIL
	138 -> 158	LATGSWMIGMAGVVIHAAFVY
	218 -> 238	FGPFGEPVTVGFVMGLIIGIL
	41 -> 61	LHIGIGFVGIGLVIGLMLDSI

Classification:

Multifun Terms (GenProtEC)
		1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
		4 - transport --> 4.4 - Group Translocators --> 4.4.A - Phosphotransferase Systems (PEP-dependent PTS)
		6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)
	cellular_component	GO:0005886 - plasma membrane GO:0005887 - integral component of plasma membrane
	molecular_function	GO:0005515 - protein binding GO:0090584 - protein-phosphocysteine-galactitol-phosphotransferase system transporter activity
	biological_process	GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0015796 - galactitol transport

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

PRODB:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

gatYZABCD

Operon arrangement:

Transcription unit	Promoter
gatZABCD	gatZp
gatYZABCD	gatYp

Transcriptional Regulation
	Display Regulation
Activated by:	CRP
Repressed by:	ArcA, GatR

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2406 (cluster)	2172607	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2172606 to 2172607, where the highest frequency is at position 2170631. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2407	2174427	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2408	2174431	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2409 (cluster)	2174473	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2174472 to 2174473, where the highest frequency is at position 2172494. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2410	2174500	reverse	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.