RegulonDB RegulonDB 10.7: Gene Form
   

idnT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

idnT idnR idnO anti-anti-terminator anti-terminator terminator terminator TSS_5118 TSS_5118 idnRp idnRp

Gene      
Name: idnT    Texpresso search in the literature
Synonym(s): ECK4258, EG12539, b4265, gntW, yjgT
Genome position(nucleotides): 4491206 <-- 4492525 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.61
External database links:  
ASAP:
ABE-0013969
ECHOBASE:
EB2428
OU-MICROARRAY:
b4265
PORTECO:
idnT
REGULONDB:
b4265
STRING:
511145.b4265
M3D: idnT
COLOMBOS: idnT
PortEco: b4265


Product      
Name: L-idonate/5-ketogluconate/gluconate transporter
Synonym(s): GntW, IdnT, YjgT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 46.041
Isoelectric point: 7.015
Motif(s):
 
Type Positions Sequence
418 -> 438 VMETLISIMGLLGVLAINAVL
25 -> 45 FIALVLVAAVVGFAEGMDAQA
52 -> 72 NGIGSTLGGLAMILGFGAMLG
173 -> 193 TTLLYGFIITIPTVIVAGPLF
255 -> 275 FFEFVGNPAVALFIAIVIAIF

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015128 - gluconate transmembrane transporter activity
GO:0015568 - L-idonate transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0046183 - L-idonate catabolic process
GO:0019521 - D-gluconate metabolic process
GO:0015726 - L-idonate transmembrane transport
GO:0035429 - gluconate transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-10014N
ECOCYC:
YJGT-MONOMER
ECOLIWIKI:
b4265
INTERPRO:
IPR003474
MINT:
MINT-1218744
PANTHER:
PTHR30354
PFAM:
PF02447
PRIDE:
P39344
PRODB:
PRO_000022997
PROTEINMODELPORTAL:
P39344
REFSEQ:
NP_418686
UNIPROT:
P39344


Operon      
Name: idnDOTR         
Operon arrangement:
Transcription unit        Promoter
idnR
idnDOTR


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, IdnR
Repressed by: GntR


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5118 4491570 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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