RegulonDB RegulonDB 10.7: Gene Form
   

yacL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

acnB speD yacL terminator anti-terminator anti-anti-terminator yacLp yacLp TSS_259 TSS_259 TSS_258 TSS_258 TSS_257 TSS_257 TSS_256 TSS_256 TSS_255 TSS_255

Gene      
Name: yacL    Texpresso search in the literature
Synonym(s): ECK0118, EG12605, b0119
Genome position(nucleotides): 134388 --> 134750 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.07
External database links:  
ASAP:
ABE-0000414
ECHOBASE:
EB2489
OU-MICROARRAY:
b0119
PORTECO:
yacL
REGULONDB:
b0119
STRING:
511145.b0119
M3D: yacL
COLOMBOS: yacL
PortEco: b0119


Product      
Name: UPF0231 family protein YacL
Synonym(s): YacL
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 13.942
Isoelectric point: 4.164
Motif(s):
 
Type Positions Sequence
1 -> 117 MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFV

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-47876N
ECOCYC:
EG12605-MONOMER
ECOLIWIKI:
b0119
INTERPRO:
IPR008249
MINT:
MINT-1220984
PFAM:
PF06062
PRIDE:
P0A8E5
PRODOM:
PD020773
PROTEINMODELPORTAL:
P0A8E5
REFSEQ:
NP_414661
UNIPROT:
P0A8E5


Operon      
Name: yacL         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_255 131743 forward nd [RS-EPT-CBR] [1]
  promoter TSS_256 132124 forward nd [RS-EPT-CBR] [1]
  promoter TSS_257 132840 forward nd [RS-EPT-CBR] [1]
  promoter TSS_258 133449 forward nd [RS-EPT-CBR] [1]
  promoter TSS_259 133468 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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