RegulonDB RegulonDB 10.7: Gene Form
   

caiE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

caiD caiE caiF caiEp3 caiEp3 caiEp5 caiEp5 caiEp7 caiEp7

Gene      
Name: caiE    Texpresso search in the literature
Synonym(s): ECK0036, EG12608, b0035
Genome position(nucleotides): 34781 <-- 35371 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.99
External database links:  
ASAP:
ABE-0000128
CGSC:
36834
ECHOBASE:
EB2492
OU-MICROARRAY:
b0035
PORTECO:
caiE
REGULONDB:
b0035
STRING:
511145.b0035
M3D: caiE
COLOMBOS: caiE
PortEco: b0035


Product      
Name: putative transferase CaiE
Synonym(s): CaiE
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.244
Isoelectric point: 6.795
Motif(s):
 
Type Positions Sequence
12 -> 41 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLA
90 -> 90 L
153 -> 153 R
168 -> 168 V
126 -> 126 R

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.4 - amines
  1 - metabolism --> 1.7 - central intermediary metabolism --> 1.7.22 - carnitine metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016740 - transferase activity
biological_process GO:0009437 - carnitine metabolic process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
CAIE-MONOMER
ECOLIWIKI:
b0035
INTERPRO:
IPR001451
INTERPRO:
IPR011004
INTERPRO:
IPR023446
MODBASE:
P39206
PFAM:
PF00132
PRIDE:
P39206
PRODB:
PRO_000022244
PROSITE:
PS00101
PROTEINMODELPORTAL:
P39206
REFSEQ:
NP_414577
SMR:
P39206
UNIPROT:
P39206


Operon      
Name: caiTABCDE         
Operon arrangement:
Transcription unit        Promoter
caiTABCDE
caiCDE


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, FNR, ArcA, CaiF
Repressed by: H-NS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter caiEp7 35399 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter caiEp5 35440 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter caiEp3 35499 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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