RegulonDB RegulonDB 10.6.3: Gene Form
   

garP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

garD garP garL Fur garPp garPp

Gene      
Name: garP    Texpresso search in the literature
Synonym(s): ECK3115, EG12760, b3127, yhaU
Genome position(nucleotides): 3273573 <-- 3274907 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.31
External database links:  
ASAP:
ABE-0010279
ECHOBASE:
EB2613
ECOCYC:
EG12760
ECOLIHUB:
garP
OU-MICROARRAY:
b3127
REGULONDB:
b3127
STRING:
511145.b3127
M3D: garP
COLOMBOS: garP
PortEco: b3127


Product      
Name: galactarate/glucarate/glycerate transporter GarP
Synonym(s): GarP, YhaU
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 49.009
Isoelectric point: 9.341
Motif(s):
 
Type Positions Sequence
253 -> 273 LGVFFGQYFINTITWFFLTWF
414 -> 434 AALVFVGCSALMAMVCYLFVV
111 -> 131 AGISMFFMRFMLGFSEAPSFP
158 -> 178 YFSLALFSPLLGWLTFAWGWE
320 -> 340 LTLARKLPIVLGMLLASTIIL

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
YHAU-MONOMER
ECOLIWIKI:
b3127
INTERPRO:
IPR011701
INTERPRO:
IPR036259
INTERPRO:
IPR020846
INTERPRO:
IPR000849
MODBASE:
P0AA80
PFAM:
PF07690
PRIDE:
P0AA80
PROSITE:
PS50850
PROTEINMODELPORTAL:
P0AA80
REFSEQ:
NP_417596
SMR:
P0AA80
UNIPROT:
P0AA80


Operon      
Name: garPLRK-rnpB         
Operon arrangement:
Transcription unit        Promoter
rnpB
garPLRK-rnpB


Transcriptional Regulation      
Display Regulation             
Activated by: FNR, CdaR
Repressed by: Fur, H-NS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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