RegulonDB RegulonDB 10.9: Gene Form
   

agaA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

agaS agaA agaV agaW AgaR AgaR AgaR AgaR AgaR AgaR agaSp agaSp

Gene      
Name: agaA    Texpresso search in the literature
Synonym(s): ECK3123, EG12766, b3135, yraA
Type: Pseudo Gene
Genome position(nucleotides): 3281122 --> 3281625 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.94
External database links:  
ASAP:
ABE-0010302
ECHOBASE:
EB2619
ECOLIHUB:
agaA
ECOO157CYC:
Z4489
OU-MICROARRAY:
b3135
STRING:
316407.85675931
COLOMBOS: agaA


Product      
Name: putative truncated N-acetylgalactosamine-6-phosphate deacetylase
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.044
Motif(s):
 
Type Positions Sequence
145 -> 145 S

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Homma K., et al., 2002
[2] Reizer J., et al., 1996
External database links:  
ECOCYC:
AGAA-MONOMER
ECOLIWIKI:
b3135
ECOO157CYC:
Z4489-MONOMER
INTERPRO:
IPR011059
INTERPRO:
IPR032466
INTERPRO:
IPR006680
MODBASE:
P42906
PFAM:
PF01979
PRIDE:
P42906
REFSEQ:
YP_026206
SMR:
P42906
SWISSMODEL:
P42906
UNIPROT:
P42906


Operon      
Name: kbaZ-agaVWA         
Operon arrangement:
Transcription unit        Promoter
kbaZ-agaVWA


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: AgaR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Homma K., Fukuchi S., Kawabata T., Ota M., Nishikawa K., 2002, A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome., Gene 294(1-2):25-33

 [2] Reizer J., Ramseier TM., Reizer A., Charbit A., Saier MH., 1996, Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli., Microbiology 142 ( Pt 2):231-50


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