RegulonDB RegulonDB 10.7: Gene Form
   

yqcE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygcE yqcE ygcW terminator yqcEp6 yqcEp6 ygcWp12 ygcWp12 ygcWp11 ygcWp11 ygcUp5 ygcUp5

Gene      
Name: yqcE    Texpresso search in the literature
Synonym(s): ECK2769, EG13174, b2775, yqcF
Genome position(nucleotides): 2900592 --> 2901869 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.69
External database links:  
ASAP:
ABE-0009095
ECHOBASE:
EB2966
OU-MICROARRAY:
b2775
PORTECO:
yqcE
REGULONDB:
b2775
STRING:
511145.b2775
M3D: yqcE
COLOMBOS: yqcE
PortEco: b2775


Product      
Name: putative transport protein YqcE
Synonym(s): YqcE, YqcF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 46.831
Isoelectric point: 9.048
Motif(s):
 
Type Positions Sequence
97 -> 117 PLWVMLCIQIAFAITTILMLW
172 -> 192 TVIIIYSVVYILLGILCWFFV
292 -> 312 VIQILSVLGLLTLTALLVTNS
314 -> 334 PQSVAMGIGLILLLGFTCYAS
355 -> 375 TVGICSVIGFLPDVFVYPIIG

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
DIP:
DIP-12849N
ECOCYC:
B2775-MONOMER
ECOLIWIKI:
b2775
INTERPRO:
IPR011701
INTERPRO:
IPR020846
INTERPRO:
IPR036259
MINT:
MINT-1248595
MODBASE:
P77031
PFAM:
PF07690
PRIDE:
P77031
PROSITE:
PS50850
PROTEINMODELPORTAL:
P77031
REFSEQ:
NP_417255
UNIPROT:
P77031


Operon      
Name: yqcE-ygcE         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygcUp5 2899607 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ygcWp11 2900409 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ygcWp12 2900471 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yqcEp6 2900472 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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