RegulonDB RegulonDB 10.6.3: Gene Form
   

dgoT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgoT yidR dgoD cbrA dgoA terminator terminator yidRp2 yidRp2 cbrAp6 cbrAp6

Gene      
Name: dgoT    Texpresso search in the literature
Synonym(s): ECK3683, EG20053, b3691, yidT
Genome position(nucleotides): 3870438 <-- 3871730 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.98
External database links:  
ASAP:
ABE-0012072
CGSC:
856
ECHOBASE:
EB1666
ECOCYC:
EG20053
ECOLIHUB:
dgoT
OU-MICROARRAY:
b3691
REGULONDB:
b3691
STRING:
511145.b3691
M3D: dgoT
COLOMBOS: dgoT
PortEco: b3691


Product      
Name: putative D-galactonate transporter
Synonym(s): DgoT, YidT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 47.077
Isoelectric point: 9.692
Motif(s):
 
Type Positions Sequence
18 -> 38 LVMIFITVVICYVDRANLAVA
284 -> 304 VPFLAAFVGVLLSGWVADLLV
243 -> 263 IGVYLGQFAVASTLWFFLTWF
21 -> 389 IFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVP
55 -> 75 YVFSAFAWLYTLCQIPGGWFL

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-9436N
ECOCYC:
YIDT-MONOMER
ECOLIWIKI:
b3691
INTERPRO:
IPR020846
INTERPRO:
IPR036259
INTERPRO:
IPR011701
INTERPRO:
IPR004744
MODBASE:
P0AA76
PANTHER:
PTHR11662:SF333
PFAM:
PF07690
PRIDE:
P0AA76
PRODB:
PRO_000022436
PROSITE:
PS50850
PROTEINMODELPORTAL:
P0AA76
REFSEQ:
NP_418146
SMR:
P0AA76
UNIPROT:
P0AA76


Operon      
Name: dgoRKADT         
Operon arrangement:
Transcription unit        Promoter
null


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: DgoR


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter cbrAp6 3869314 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yidRp2 3869412 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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