RegulonDB RegulonDB 10.8: Gene Form
   

alaW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfeC alaW alaX Fis terminator TSS_2681 (cluster) TSS_2681 (cluster) yfeCp yfeCp yfeCp3 yfeCp3 yfeCp4 yfeCp4 yfeCp5 yfeCp5 alaXp4 alaXp4 alaXp2 alaXp2 alaXp5 alaXp5 alaWp alaWp

Gene      
Name: alaW    Texpresso search in the literature
Synonym(s): ECK2391, EG30011, alaWalpha, b2397
Genome position(nucleotides): 2518156 <-- 2518231 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
60.53
External database links:  
ASAP:
ABE-0007904
CGSC:
32851
ECHOBASE:
EB4174
OU-MICROARRAY:
b2397
PortEco:
alaW
COLOMBOS: alaW


Product      
Name: tRNA-Ala(GGC)
Synonym(s): tRNAalaW
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
alaW-tRNA
ECOLIWIKI:
b2397


Operon      
Name: alaWX         
Operon arrangement:
Transcription unit        Promoter
alaWX


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter alaXp5 2518259 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter alaXp2 2518279 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter alaXp4 2518306 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfeCp5 2518334 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfeCp4 2518375 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfeCp3 2518384 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2681 (cluster) 2518419 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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