RegulonDB RegulonDB 10.8: Gene Form
   

asnT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yeeJ mtfA asnT terminator TSS_2286 TSS_2286 yeeJp8 yeeJp8 TSS_2285 TSS_2285 asnTp asnTp TSS_2284 TSS_2284

Gene      
Name: asnT    Texpresso search in the literature
Synonym(s): ECK1973, EG30020, b1977
Genome position(nucleotides): 2044549 --> 2044624 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.63
External database links:  
ASAP:
ABE-0006560
CGSC:
992
ECHOBASE:
EB4183
OU-MICROARRAY:
b1977
PortEco:
asnT
COLOMBOS: asnT


Product      
Name: tRNA-Asn(GUU)
Synonym(s): tRNAasnT
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Kimura-Harada F., et al., 1972
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
asnT-tRNA
ECOLIWIKI:
b1977


Operon      
Name: asnT         
Operon arrangement:
Transcription unit        Promoter
asnT


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2284 2044204 forward nd [RS-EPT-CBR] [3]
  promoter TSS_2285 2044549 forward nd [RS-EPT-CBR] [3]
  promoter yeeJp8 2044763 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_2286 2051392 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Kimura-Harada F., Harada F., Nishimura S., 1972, The presence of N-[9-(c-D-ribofuranosyl)purin-6-ylcarbamoyl] threonine in isoleucine, threonine and asparagine tRNAs from Escherichia coli., FEBS Lett 21(1):71-74

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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