RegulonDB RegulonDB 10.8: Gene Form
   

asnV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ldtA nac asnV NtrC Nac TSS_2302 (cluster) TSS_2302 (cluster) TSS_2301 TSS_2301 TSS_2300 TSS_2300 asnVp asnVp nacp nacp

Gene      
Name: asnV    Texpresso search in the literature
Synonym(s): ECK1984, EG30022, b1989
Genome position(nucleotides): 2062260 --> 2062335 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.63
External database links:  
ASAP:
ABE-0006605
CGSC:
17743
ECHOBASE:
EB4185
OU-MICROARRAY:
b1989
PortEco:
asnV
COLOMBOS: asnV


Product      
Name: tRNA-Asn(GUU)
Synonym(s): tRNAasnV
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Kimura-Harada F., et al., 1972
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
asnV-tRNA
ECOLIWIKI:
b1989


Operon      
Name: asnV         
Operon arrangement:
Transcription unit        Promoter
asnV


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2300 2062260 forward nd [RS-EPT-CBR] [3]
  promoter TSS_2301 2062756 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2302 (cluster) 2062780 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Kimura-Harada F., Harada F., Nishimura S., 1972, The presence of N-[9-(c-D-ribofuranosyl)purin-6-ylcarbamoyl] threonine in isoleucine, threonine and asparagine tRNAs from Escherichia coli., FEBS Lett 21(1):71-74

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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