RegulonDB RegulonDB 10.8: Gene Form
   

aspV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yafT dnaQ aspV Fis yafTp6 yafTp6 yafTp5 yafTp5 yafTp4 yafTp4 TSS_435 TSS_435 aspVp aspVp

Gene      
Name: aspV    Texpresso search in the literature
Synonym(s): ECK0216, EG30025, b0216
Genome position(nucleotides): 236931 --> 237007 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
63.64
External database links:  
ASAP:
ABE-0000724
CGSC:
987
ECHOBASE:
EB4188
OU-MICROARRAY:
b0216
PortEco:
aspV
COLOMBOS: aspV


Product      
Name: tRNA-Asp(GUC)
Synonym(s): tRNAaspV
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Horiuchi T., et al., 1987
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
aspV-tRNA
ECOLIWIKI:
b0216


Operon      
Name: aspV         
Operon arrangement:
Transcription unit        Promoter
aspV


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_435 236931 forward nd [RS-EPT-CBR] [3]
  promoter yafTp4 237235 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yafTp5 237260 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yafTp6 237278 forward Similarity to the consensus
Read more >
[ICWHO] [4]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Horiuchi T., Nagasawa T., Takano K., Sekiguchi M., 1987, A newly discovered tRNA(1Asp) gene (aspV) of Escherichia coli K12., Mol Gen Genet 206(2):356-7

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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